Sex-specific DNA methylation and gene expression in andromonoecious poplar.
Identifieur interne : 002919 ( Main/Exploration ); précédent : 002918; suivant : 002920Sex-specific DNA methylation and gene expression in andromonoecious poplar.
Auteurs : Yuepeng Song [République populaire de Chine] ; Kaifeng Ma ; Wenhao Bo ; Zhiyi Zhang ; Deqiang ZhangSource :
- Plant cell reports [ 1432-203X ] ; 2012.
Descripteurs français
- KwdFr :
- ARN messager (génétique), ARN messager (métabolisme), Analyse de profil d'expression de gènes (MeSH), Analyse de séquence d'ADN (MeSH), Cytosine (métabolisme), Données de séquences moléculaires (MeSH), Gènes de plante (génétique), Méthylation de l'ADN (génétique), Pollen (anatomie et histologie), Pollen (cytologie), Pollen (génétique), Pollen (ultrastructure), Polymorphisme génétique (MeSH), Populus (croissance et développement), Populus (cytologie), Populus (génétique), Populus (ultrastructure), Protéines végétales (génétique), Protéines végétales (métabolisme), Reproductibilité des résultats (MeSH), Réaction de polymérisation en chaine en temps réel (MeSH), Régulation de l'expression des gènes au cours du développement (MeSH), Régulation de l'expression des gènes végétaux (MeSH).
- MESH :
- anatomie et histologie : Pollen.
- croissance et développement : Populus.
- cytologie : Pollen, Populus.
- génétique : ARN messager, Gènes de plante, Méthylation de l'ADN, Pollen, Populus, Protéines végétales.
- métabolisme : ARN messager, Cytosine, Protéines végétales.
- ultrastructure : Analyse de profil d'expression de gènes, Analyse de séquence d'ADN, Données de séquences moléculaires, Pollen, Polymorphisme génétique, Populus, Reproductibilité des résultats, Réaction de polymérisation en chaine en temps réel, Régulation de l'expression des gènes au cours du développement, Régulation de l'expression des gènes végétaux.
English descriptors
- KwdEn :
- Cytosine (metabolism), DNA Methylation (genetics), Gene Expression Profiling (MeSH), Gene Expression Regulation, Developmental (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (genetics), Molecular Sequence Data (MeSH), Plant Proteins (genetics), Plant Proteins (metabolism), Pollen (anatomy & histology), Pollen (cytology), Pollen (genetics), Pollen (ultrastructure), Polymorphism, Genetic (MeSH), Populus (cytology), Populus (genetics), Populus (growth & development), Populus (ultrastructure), RNA, Messenger (genetics), RNA, Messenger (metabolism), Real-Time Polymerase Chain Reaction (MeSH), Reproducibility of Results (MeSH), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , genetics : Plant Proteins, RNA, Messenger.
- chemical , metabolism : Cytosine, Plant Proteins, RNA, Messenger.
- anatomy & histology : Pollen.
- cytology : Pollen, Populus.
- genetics : DNA Methylation, Genes, Plant, Pollen, Populus.
- growth & development : Populus.
- ultrastructure : Pollen, Populus.
- Gene Expression Profiling, Gene Expression Regulation, Developmental, Gene Expression Regulation, Plant, Molecular Sequence Data, Polymorphism, Genetic, Real-Time Polymerase Chain Reaction, Reproducibility of Results, Sequence Analysis, DNA.
Abstract
UNLABELLED
The andromonoecious poplar is an exceptional model system for studying sex-specific flower development in dioecious plants. There is increasing evidence that epigenetic regulation, particularly DNA methylation, is an important regulatory factor during flower development. Here, methylation-sensitive amplified polymorphism (MSAP) was used to screen for sex-specific DNA methylation alterations in the andromonoecious poplar. The sequences of 27 sex-specific amplified fragments were obtained from DNA prepared from sex-specific flower tissues. PtGT2, PtPAL3, and PtCER4, which are homologous to MF26, MF29, and MF35, respectively, were cloned as candidate genes. Expression analysis and DNA methylation pattern profiling of the three candidate genes revealed that gene expression upregulation was always associated with gene body methylation. The results suggested that DNA methylation sites have the potential to regulate the genes' transcript levels. These three genes were shown to play important roles during different phases of flower development. This study will help to provide candidates for future experiments aimed at understanding the mechanism, whereby DNA methylation regulates gene expression in poplar.
KEY MESSAGES
We report the first screen for sex-specific DNA methylation alterations in the andromonoecious poplar. 27 sex-specific methylation sites were identified. The gene expression levels and DNA methylation patterns were detected for three candidate genes.
DOI: 10.1007/s00299-012-1255-7
PubMed: 22476437
Affiliations:
Links toward previous steps (curation, corpus...)
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l'expression des gènes végétaux</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>UNLABELLED</b></p><p>The andromonoecious poplar is an exceptional model system for studying sex-specific flower development in dioecious plants. There is increasing evidence that epigenetic regulation, particularly DNA methylation, is an important regulatory factor during flower development. Here, methylation-sensitive amplified polymorphism (MSAP) was used to screen for sex-specific DNA methylation alterations in the andromonoecious poplar. The sequences of 27 sex-specific amplified fragments were obtained from DNA prepared from sex-specific flower tissues. PtGT2, PtPAL3, and PtCER4, which are homologous to MF26, MF29, and MF35, respectively, were cloned as candidate genes. Expression analysis and DNA methylation pattern profiling of the three candidate genes revealed that gene expression upregulation was always associated with gene body methylation. The results suggested that DNA methylation sites have the potential to regulate the genes' transcript levels. These three genes were shown to play important roles during different phases of flower development. This study will help to provide candidates for future experiments aimed at understanding the mechanism, whereby DNA methylation regulates gene expression in poplar.</p></div><div type="abstract" xml:lang="en"><p><b>KEY MESSAGES</b></p><p>We report the first screen for sex-specific DNA methylation alterations in the andromonoecious poplar. 27 sex-specific methylation sites were identified. The gene expression levels and DNA methylation patterns were detected for three candidate genes.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22476437</PMID><DateCompleted><Year>2012</Year><Month>11</Month><Day>13</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-203X</ISSN><JournalIssue CitedMedium="Internet"><Volume>31</Volume><Issue>8</Issue><PubDate><Year>2012</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Plant cell reports</Title><ISOAbbreviation>Plant Cell Rep</ISOAbbreviation></Journal><ArticleTitle>Sex-specific DNA methylation and gene expression in andromonoecious poplar.</ArticleTitle><Pagination><MedlinePgn>1393-405</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00299-012-1255-7</ELocationID><Abstract><AbstractText Label="UNLABELLED">The andromonoecious poplar is an exceptional model system for studying sex-specific flower development in dioecious plants. There is increasing evidence that epigenetic regulation, particularly DNA methylation, is an important regulatory factor during flower development. Here, methylation-sensitive amplified polymorphism (MSAP) was used to screen for sex-specific DNA methylation alterations in the andromonoecious poplar. The sequences of 27 sex-specific amplified fragments were obtained from DNA prepared from sex-specific flower tissues. PtGT2, PtPAL3, and PtCER4, which are homologous to MF26, MF29, and MF35, respectively, were cloned as candidate genes. Expression analysis and DNA methylation pattern profiling of the three candidate genes revealed that gene expression upregulation was always associated with gene body methylation. The results suggested that DNA methylation sites have the potential to regulate the genes' transcript levels. These three genes were shown to play important roles during different phases of flower development. This study will help to provide candidates for future experiments aimed at understanding the mechanism, whereby DNA methylation regulates gene expression in poplar.</AbstractText><AbstractText Label="KEY MESSAGES" NlmCategory="CONCLUSIONS">We report the first screen for sex-specific DNA methylation alterations in the andromonoecious poplar. 27 sex-specific methylation sites were identified. 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|wiki= Bois
|area= PoplarV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:22476437
|texte= Sex-specific DNA methylation and gene expression in andromonoecious poplar.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:22476437" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarV1
| This area was generated with Dilib version V0.6.37. |  |